Introducing the Workflow for Data Analysis

posted Apr 15, 2020, 12:53 AM by Vinod Scaria   [ updated Apr 15, 2020, 1:02 AM ]

This section summarizes the analysis workflow followed for generating the information that goes into each of the Genome Analysis Summaries report. The data sources are linked appropriately for reference.

Introducing the Workflow for Data Analysis

Genomes Analysed
The genomes analysed are from the listings available at COVID-19 Genomepedia maintained by the Vinod Scaria Lab at CSIR Institute of Genomics and Integrative Biology.

Reference Alignment
Reference alignment of the genomes are accomplished by EMBOSS needle 
Reference genome considered for all analysis is NC_045512 available from Genbank

Primer Probe Information
The primer/probe information analysed is from a crowd-sourced compendium created as part of the COVID-19 Open Research, Data and Resources.