![]() | GENEPI RESOURCES ![]() RESOURCES ![]() IndiCoV is a comprehensive resource of genetic variants and variant annotations of SARS-COV-2 genomes from India. [Open to Collaborate] COVID-19 Genome Phylogeny ShortURL: http://bit.ly/c19phylovis ShortURL: http://bit.ly/c19genomes COVID-19 Beacon ShortURL: http://covid19.genomes.in | RELEVANT PUBLICATIONS Clinical Infectious Diseases (2020) ciaa1451, https://doi.org/10.1093/cid/ciaa1451 Banu S, Jolly B, Mukherjee M, Singh P, Khan S, Zaveri L, Shambhavi S, Gaur N, Mishra RK, Scaria V, Sowpati DT A distinct phylogenetic cluster of Indian SARS-CoV-2 isolates Open Forum Infectious Diseases, (2020), ofaa434, https://doi.org/10.1093/ofid/ofaa434 Poojary M, Shantaraman A, Jolly B, Scaria V Computational Protocol for Assembly and Analysis of SARS-nCoV-2 Genomes Research Reports (2020) Accepted Analysis of the potential impact of genomic variants in global SARS-CoV-2 genomes on molecular diagnostic assays International Journal of Infectious Diseases https://doi.org/10.1016/j.ijid.2020.10.086 Bhoyar RC, et al, High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing bioRxiv 2020.08.10.242677; doi: https://doi.org/10.1101/2020.08.10.242677 [Preprint] Radhakrishnan C, Divakar MK, Jain A et al, Initial insights into the genetic epidemiology of SARS-CoV-2 isolates from Kerala suggest local spread from limited introductions bioRxiv 2020.09.09.289892; doi: https://doi.org/10.1101/2020.09.09.289892 [Preprint] Asymptomatic Reactivation of SARS-CoV-2 in a Child with Neuroblastoma Characterised by Whole Genome Sequencing. Authorea. October 12, 2020. DOI: 10.22541/au.160253792.25165912/v1 [Preprint] Sivakumar S, Vimal S, Majeed SA, Kumar SS, Taju G, Madan N, Rajkumar T, Thamizhvanan S, Shamsudheen KV, Scaria V, Sivasubbu S, Hameed ASS A new strain of white spot syndrome virus affecting Litopenaeus vannamei in Indian shrimp farms J Fish Dis. (2018) ;1–18 DOI: 10.1111/jfd.12811 Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach PLoS ONE (2015) https://doi.org/10.1371/journal.pone.0128711 Patowary A, Chauhan RK, Singh M, Shamsudheen KV, Periwal V, Kushwaha KP, Sapkal GN, Bondre VP, Gore MM, Sivasubbu S and Scaria V De novo identification of viral pathogens from cell culture hologenomes BMC Research Notes 2012, 5:11 |