ABOUT THE COVID-19 OPEN RESEARCH INITIATIVE
The recent declaration of COVID-19 as a global pandemic by the World Health Organisation has prompted us to make the relevant Data, Research and Resources at the Vinod Scaria Lab at CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB) in an open format to ensure that they are widely accessible as well as relevant. The programme would embrace the concepts of open-source and open access.
Gupta, V., Bhoyar, R. C., Jain, A., Srivastava, et al, Asymptomatic reinfection in two healthcare workers from India with genetically distinct SARS-CoV-2. Clinical Infectious Diseases (2020) ciaa1451, https://doi.org/10.1093/cid/ciaa1451
Govindaraj GM, Krishnakumar P, Scaria V, Athulya E, Ajithkumar VT, Dongre AR. Building on an Ad Hoc Covid-19 Response to Enhance Community-based Care for Vulnerable Children in Kerala, India. NEJM Catal Innov Care Deliv. (2020) doi: 10.1056/CAT.20.0543.
Banu S, Jolly B, Mukherjee M, Singh P, Khan S, Zaveri L, Shambhavi S, Gaur N, Mishra RK, Scaria V, Sowpati DT A distinct phylogenetic cluster of Indian SARS-CoV-2 isolates Open Forum Infectious Diseases, (2020), ofaa434, https://doi.org/10.1093/ofid/ofaa434
Poojary M, Shantaraman A, Jolly B, Scaria V Computational Protocol for Assembly and Analysis of SARS-nCoV-2 Genomes Research Reports (2020) Accepted
Jain A, Rophina M, Mahajan S, Krishnan BB, Sharma M, Mandal S, Fernandez T, Sultanji S, Mathew S, Sivasubbu S, Scaria V Analysis of the potential impact of genomic variants in global SARS-CoV-2 genomes on molecular diagnostic assays International Journal of Infectious Diseases https://doi.org/10.1016/j.ijid.2020.10.086
Bhoyar RC, et al, High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing PLoS ONE (2021) Accepted
Radhakrishnan C, Divakar MK, Jain A et al, Initial insights into the genetic epidemiology of SARS-CoV-2 isolates from Kerala suggest local spread from limited introductions Frontiers in Genetics (2021) Accepted
Yadav SP, Thakkar D, Bhoyar RC, Jain A, Wadhwa T, Imran M, Jolly B, Divakar MK, Kapoor R, Rastogi N, Sharma D, Sehgal P, Ranjan G, Sivasubbu S, Sarma S, Scaria VAsymptomatic reactivation of SARS-CoV-2 in a child with neuroblastoma characterised by whole genome sequencing,IDCases (2021), e01018, https://doi.org/10.1016/j.idcr.2020.e01018.
Rani, PR., Imran M, Lakshmi J, Jolly B, Jain A, Surekha A, Senthivel V, et al.Symptomatic Reinfection of Sars-cov-2 with Spike Protein Variant N440K Associated with Immune Escape. J Med Virol . 2021 Apr 5. doi: 10.1002/jmv.26997
Jolly B, Scaria VComputational Analysis and Phylogenetic clustering of SARS-nCov-2 GenomesBio-protocol (2021) Accepted
Rophina, M., Pandhare, K., Mangla, M., Shamnath, A., Jolly, B., Sethi, M., & Scaria, V. FaviCoV -a comprehensive manually curated resource for functional genetic variants in SARS-CoV-2.OSF Preprints (2020, November 17). https://doi.org/10.31219/osf.io/wp5tx [Preprint]
Jolly B, Rophina M, Shamnath A, Imran M, Bhoyar RC, Divakar M, Rani PR, Ranjan G, Sehgal P, Chandrasekhar P, Afsar S, Vijaya Lakshmi J, Surekha A, Sivasubbu S, Scaria VGenetic epidemiology of variants associated with immune escape from global SARS-CoV-2 genomesbioRxiv 2020.12.24.424332; doi: https://doi.org/10.1101/2020.12.24.424332 [Preprint]
Rophina M, Pandhare K, Shamnath A, et al. ESC - a comprehensive resource for SARS-CoV-2 immune escape variants. bioRxiv; 2021. DOI: 10.1101/2021.02.18.431922.
The COVID-19 Open Research, Data and Resources is an initiative to make available research and resources at his lab at the CSIR Institute of Genomics and Integrative Biology in an open format to ensure they are widely accessible. Scaria’s genome sequencing of the novel coronavirus is now widely used across the world to understand its characteristics.