 Open Data, Standards and Tools for Translational Genomics  Crowd Computing for Scientific ResearchForthcoming talks
Information for Potential Interns and Summer StudentsI have only limited opportunities for Interns/Summer students, usually 2 at a time. As an Institute policy the duration should be more than 3 months, and I would prefer someone for 6 months or more. Please note that all prospective Interns and Summer Students need to write a short proposal ( a paragraph would do) on an innovative idea they think could be performed during their internship. This need not be on something I generally work on. To make sure you are a legitimate applicant and not a spammer, please add "[Internship]" in your subject. I generally would not need unsolicited recommendations.  Attractive oppurtunity to participate in Collaborative Cheminformatics Research and work closely with a number of researchers across the country as part of the Open Source Drug Discovery Initiative |
Whole Genome Sequencing Initiatives / Collaborations Indian Human Genome Sri Lankan Human Genome [overview] Malaysian Genome Zebrafish Wild-type Strain [Data/Resources] (in collaboration with Dr. Sridhar Sivasubbu, IGIB) Pan Asian Population Genomics Initiative (PAPGI) Recent Publications Giri AK, Khan NM, Narayanan D, INDICO, Basu A, Tandon N, Scaria V*, Bharadwaj D* Pharmacogenetic landscape of Clopidogrel in North Indians suggest distinct inter-population differences in allele frequencies Pharmacogenomics (2014) Accepted Kaushik K, Leonard VE, Shamsudheen KV, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V*and Sivasubbu S* Dynamic Expression of Long Non-coding RNAs (lncRNAs) in Adult Zebrafish PLoS ONE (2013) Accepted Bhartiya D, Jalali S, Ghosh S, Scaria V* Distinct patterns of genetic variations in potentially functional elements in long noncoding RNAs Human Mutation (2013) Accepted Jamal S, Arora S , Scaria V* Computational analysis and predictive cheminformatics modeling of small molecule inhibitors of epigenetic modifiers PLoS ONE (2013) Accepted Jamal S, OSDD Consortium, Scaria V* Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana BMC Bioinformatics (2013) Accepted. Vellarikkal S, Singh A, Singh P, Garg P, Katoch V, Katoch K, OSDD Consortium, Chauhan D, Scaria V*, Sivasubbu S* Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493 Genome Announcements (2013) Accepted Sivasubbu S*, Sachidanandan C*, Scaria V* Systematic Pharmacogenomics analysis of a Malay whole genome : Proof of concept for Personalised Medicine.Time for the zebrafish ENCODE Journal of Genetics (2013) Accepted Salleh MZ*, Teh LK, Lee LS, Ismet RI, Patowary A, Joshi K, Pasha A, Ahmed AZ, Janor MH, Hamzah AS, Adam I, Yusoff K, Hoh BP, Hatta FM, Ismail MI, Scaria V*, Sivasubbu S* PLoS ONE (2013) Accepted Bhartiya D,Pal K, Ghosh S, Kapoor S, Jalali S, Panwar B, Jain S, Sati S, Sengupta S, Sachidanandan C, Raghava GPS, Sivasubbu S and Scaria V* lncRNome: a comprehensive knowledgebase of human long noncoding RNAs Database (2013) Accepted Patowary A, Purkanti R, Singh M, Chauhan R,Singh AR, Swarnkar M, Singh N, Pandey V, Torroja C, Clark MD, Kocher J, Clark KJ, Stemple DL, Klee EW, Ekker SC*, Scaria V*, Sivasubbu S* Zebrafish (2013) 10(1): 15-20. [cover article] (*as communicating/co-communicating author)(^as member of consortium) |
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