 Open Data, Standards and Tools for Translational Genomics  Crowd Computing for Scientific ResearchForthcoming talks
Information for Potential Interns and Summer StudentsI have only limited opportunities for Interns/Summer students, usually 2 at a time. As an Institute policy the duration should be more than 3 months, and I would prefer someone for 6 months or more. Please note that all prospective Interns and Summer Students need to write a short proposal ( a paragraph would do) on an innovative idea they think could be performed during their internship. This need not be on something I generally work on. To make sure you are a legitimate applicant and not a spammer, please add "[Internship]" in your subject. I generally would not need unsolicited recommendations.  Attractive oppurtunity to participate in Collaborative Cheminformatics Research and work closely with a number of researchers across the country as part of the Open Source Drug Discovery InitiativeCould also register online at crowdomics portal |
Whole Genome Sequencing Initiatives / Collaborations First Indian Human Genome Sri Lankan Human Genome [overview] Malaysian Genome Zebrafish Wild-type Strain [Data/Resources] Mycobacterium tuberculosis genomes (in collaboration with Dr. Sridhar Sivasubbu, IGIB) Pan Asian Population Genomics Initiative (PAPGI) Recent Publications Periwal V, Scaria V* Insights into structural variations and genome re-arrangements in prokaryotic genomes Bioinformatics (2015) Jan 1;31(1):1-9. Epub 2014 Sep 4. Gupta A, Sharma YK, Vellarikkal SK, Jayarajan R, Dixit V , Verma A ,Sivasubbu S and Scaria V* Whole-exome sequencing solves diagnostic dilemma in a rare case of sporadic acrokeratosis verruciformisJournal of the European Academy of Dermatology and Venereology (2015) Accepted Scaria V Joining the long shots: emerging evidence on the role of long noncoding RNAs in rheumatoid arthritis Int J Rheum Dis (2015) Accepted Behera B, Das P, Maharana J, Paria P, Mandal S, Meena D, Sharma A, Jayarajan R, Dixit V, Verma A, Vellarikkal S, Scaria V, Sivasubbu S, Rao A and Mohapatra T Draft Genome Sequence of the extremely halophilic Bacterium Halomonas salina sp. Strain CIFRI1 isolated from East Coast of India Genome Announc. (2015) January/February 2015 3:e01321-14; doi:10.1128/genomeA.01321-14 Ghosh S, Sati S, Sengupta S* and Scaria V* Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long non-coding RNAs J Genetics (2015) Accepted Ghosh S, Sengupta S* and Scaria V* Comparative analysis of Human mitochondrial methylomes show distinct patterns of epigenetic regulation in mitochondria Mitochondrion (2014) Sep;18:58-62. doi: 10.1016/j.mito.2014.07.007. Epub 2014 Jul 22. Vellarikkal SK, Patowary A, Singh M, Kumari R, Faruq M, Master DC, Sivasubbu S*and Scaria V* Exome sequencing reveals a novel mutation p.L325H in KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex in a large family from Western India Human Genome Variation (2014) ) 1, 14007; doi:10.1038/hgv.2014.7 Giri AK, Khan NM, Grover S, Kaur I, Basu A, Tandon N, Scaria V, Consortium IGI, INDICO*, Kukreti R, Brahmachari SK, Bharadwaj D Genetic epidemiology of pharmacogenetic variations in CYP2C9, CYP4F2 and VKORC1 genes associated with Warfarin dosage in Indian population Pharmacogenomics (2014) Jul;15(10):1337-54. doi: 10.2217/pgs.14.88. Rajpathak SN, Vellarikkal SK,Patowary A, Scaria V*, Sivasubbu S* and Deobagkar DD* Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. PLoS ONE (2014) 9(6): e100076. doi:10.1371/journal.pone.0100076 Singh M, Bhartiya D,Maini J,Sharma M,Singh AR, Subburaj K, Rana R, Sabharwal A, Nanda S, Aravindhakshan R, Mittal A, Kapoor S, Sehgal P, Asad Z, Kaushik K, Vellarikkal SK, Jagga D, Muthulakshmi. M1, Chauhan RK, Leonard E, Priyadarshini R, Halimani M, Malhotra S, Patowary A, Vishwakarma H, Joshi P, Bhardwaj V, Bhaumik A, Bhatt B, Jha A, Kumar A, Budakoti P, Lalwani MK, Meli R, Jalali S, Joshi K, Pal K, Dhiman H, Laddha SV, Jadhav V, Singh N, Pandey V, Sachidanandan C, Ekker SC, Klee EW, Scaria V* and Sivasubbu S* The Zebrafish GenomeWiki: A crowdsourcing approach to connect the long tail for zebrafish gene annotation Database (2014) Feb 26;2014:bau011. doi: 10.1093/database/bau011. Print 2014. Giri AK, Khan NM, Narayanan D, INDICO, Basu A, Tandon N, Scaria V*, Bharadwaj D* Pharmacogenetic landscape of Clopidogrel in North Indians suggest distinct inter-population differences in allele frequencies Pharmacogenomics (2014) Apr;15(5):643-53. doi: 10.2217/pgs.13.241. Joshi KR, Dhiman H, Scaria V* Database (2014) 2014: bat083. Bhartiya D, Jalali S, Ghosh S, Scaria V* Human Mutation (2014) Feb;35(2):192-201 (*as communicating/co-communicating author)(^as member of consortium) |
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